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Integrate reviewed AgentMD fixes and restore server startup - #3

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electricwolfemarshmallowhypertext wants to merge 6 commits into
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codex/integrate-reviewed-fixes
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electricwolfemarshmallowhypertext wants to merge 6 commits into
mainfrom
codex/integrate-reviewed-fixes

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@electricwolfemarshmallowhypertext

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Integrates the reviewed CLI and memory-engine repairs with the existing signed identity work. Fixes the six critical/high dependency alerts through package upgrades and removal of unused python-jose, restores the Docker build, and routes the legacy API entry point to the existing AgentMD results server.

Local verification: 87 CLI tests passed, one POSIX-only test skipped on Windows; two API startup tests passed on Windows and inside a clean Python 3.11 image. Isolated Compose startup with Redis/SQLite and results endpoints passed. Dependency audits reported no known vulnerabilities.

Live-provider calls, PostgreSQL migration, and remote production deployment remain unverified. No provider was initialized or called. This PR is for CI verification and review only; leave it unmerged.

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